PangyPlot
Table of Contents
Basic Usage
User Interface
Navigation Bar
Choosing a Region
Viewing the Pangenome
Chromosome View
Tools
Colors
Advanced Usage
Core Concepts
PangyPlot
Basic Usage
User Interface
View page source
User Interface
Click on a section of the user interface above to learn more.
Chromosome Selector
chr1
chr2
chr3
chr4
chr5
chr6
chr7
chr8
chr9
chr10
chr11
chr12
chr13
chr14
chr15
chr16
chr17
chr18
chr19
chr20
chr21
chr22
chrX
chrY
Other
Locus Selector
p22.3
p22.2
p22.1
p21.3
p21.2
p21.1
p15.3
p15.2
p15.1
p14.3
p14.2
p14.1
p13
p12.3
p12.2
p12.1
p11.2
p11.1
q11.1
q11.21
q11.22
q11.23
q21.11
q21.12
q21.13
q21.2
q21.3
q22.1
q22.2
q22.3
q31.1
q31.2
q31.31
q31.32
q31.33
q32.1
q32.2
q32.3
q33
q34
q35
q36.1
q36.2
q36.3
Docs
GitHub
In
fo
Cita
tion
Ex
ample
Ex
ample 2
Ex
ample 3
PangyPlot v0.0.1 (alpha)
hg38
Color Style
Node Type
Bubble
Size
Node
Length
R
ef/Alt
P
osition
GC
Content
Solid
Colors
Node:
Link:
Background:
Preset Colors
Primary
Peach
Mystic
Purples
Greens
Blues
Heat
GoldenTide
Iris
Sorbet
CoralSky
Viridis
Mako
Magma
Rocket
Finalize Coordinates
#
GRCh38
Go
chr7
chr7:
27092993
27092993-
27096000
27096000
500000
500000
Select by Gene
Search genes...
chr18:63476958-63505085
SERPINB5
ENSG00000206075.14
protein coding
chr7:27092993-27096000
HOXA1
ENSG00000105991.10
Type Unknown
Gene Anno
tations
Gene NameExonsColor
Sho
w All
Hide All
Set All Colors
HOXA1
HO
XA1
HO
TAIRM1
ENSG00000277694
HO
XA2
Node Type
Segment
Bubble
Bubble Chain
HOTTIP
HOXA13
HOXA11-AS
HOXA11
HOXA10
HOXA10-AS
HOXA9
HOXA7
HOXA-AS3
HOXA3
HOXA6
HOXA5
HOXA4
HOXA-AS2
HOXA2
HOXA1
Navigation bar
NAVIGATION BAR
Chromosome selector
CHR SELECTOR
Locus selector
LOCUS SELECTOR
Gene selector
GENE SELECTOR
Canvas
CANVAS
Colors
COLORS
Tools
TOOLS
Coordinate selector
COORDINATE SELECTOR