PangyPlot is a browser that enables visualization of pangenomic data.

Quick Links

Live Instance

Preloaded with HPRC data [database files]

Prepared Data

HPRC data hosted above.

GitHub

Repository for source code and issues.

Paper

biorxiv.

Documentation

For pan-curious users: Basic usage. How to interact with an existing PangyPlot instance.

For pan-genius users: Advanced usage. How to use PangyPlot with your own data.

Citation

If you use PangyPlot in your research, please cite:

Mastromatteo, Scott., *et al.* (2025). Beyond reference bias: Making pangenomes accessible with PangyPlot. *bioRxiv*.
https://doi.org/10.1101/2025.10.31.684064

@article{Mastromatteo2025pangyplot,
  title = {Beyond reference bias: Making pangenomes accessible with PangyPlot},
  author = {Mastromatteo, Scott and ...},
  journal = {bioRxiv},
  year = {2025},
  doi = {10.1101/2025.10.31.684064}
}

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The tool is provided as-is and may be updated or withdrawn without notice. This tool is intended for research and educational purposes only. Outputs are not intended for clinical, diagnostic, or therapeutic use.