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Table of Contents

  • Basic Usage
  • Advanced Usage
    • Quick Start
    • Dotenv Setup
    • Organisms and Cytobands
    • Subcommands
      • pangyplot setup
      • pangyplot preprocess
      • pangyplot add
      • pangyplot annotate
      • pangyplot status
      • pangyplot run
      • pangyplot version
    • Calculating Graph Layout
    • Calculating Bubbles
    • On-Disk Data Layout
    • Rendering Architecture
  • Core Concepts
PangyPlot
  • Advanced Usage
  • Subcommands
  • View page source

Subcommands

PangyPlot subcommands

  • pangyplot setup
  • pangyplot preprocess
  • pangyplot add
  • pangyplot annotate
  • pangyplot status
  • pangyplot run
  • pangyplot version
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